PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019502-RA_Salv
Common NameWRKY16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 321aa    MW: 35934.8 Da    PI: 4.7591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019502-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24.1e-29110171159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgynWrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp+v+e++Y+g+H ++
  SMil_00019502-RA_Salv 110 LDDGYNWRKYGQKDILGATHPRAYYRCTHRntqGCLATKQVQRADEDPTVFEVIYRGKHSCR 171
                            59***************************98889*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.606105169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-28108172IPR003657WRKY domain
SuperFamilySSF1182902.88E-25109172IPR003657WRKY domain
SMARTSM007744.2E-40110172IPR003657WRKY domain
PfamPF031061.4E-26111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKVGVSEKK TVITVLTEGK KLANELKRQL HPTKNPTEAC DVLVESILSS YENAITLLAL  60
IENGGFEPSI SIEGSPRSEG SDHNSKKRKT MPRWSEHVRI SSGAGGEAQL DDGYNWRKYG  120
QKDILGATHP RAYYRCTHRN TQGCLATKQV QRADEDPTVF EVIYRGKHSC RQERLRQSKE  180
RKEQESLACS TLVSNGPSLI KTEKRDVIDS KDEEDLPSFS FPSTPIECEN VEPQFFSEPN  240
RFITTSYSPS SFLSSATSES YFSPSPCLVN DFGFGNSLQS SESDFGEIIS NPTPITDFSL  300
GDLDISIDEV DFESHFLDEF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-141101691773Probable WRKY transcription factor 4
2lex_A4e-141101691773Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231390.0KM823139.1 Salvia miltiorrhiza WRKY protein (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093555.11e-140PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D5Y9960.0A0A0D5Y996_SALMI; WRKY protein
STRINGPOPTR_0014s09190.12e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-46WRKY family protein